
Per-case posterior decision summary
Source:R/utils-posterior-decisions.R
summarize_per_case_effects.RdFor each case and each fixed-effect term that has a corresponding
case-level random effect, returns the case-specific posterior
(b + u) summarized with decision quantities. Case-specific
posteriors are on the link scale.
Usage
summarize_per_case_effects(
model,
case_var = "case",
study_var = "study",
threshold = NULL,
rope = NULL,
intervention_goal = c("increase", "decrease"),
ci_level = 0.95
)Arguments
- model
A fitted
brmsfit.- case_var
Name of the case-level grouping factor in the model (default
"case").- study_var
Name of the study-level grouping factor for meta-analytic fits (default
"study"). When the model carries a study-level random effect on the term, the matching study offset is added so the case-specific posterior is the fullb + u_study + u_case. Ignored for single-study fits.- threshold
Numeric. A positive magnitude expressed on the improvement-oriented scale (i.e., after any
decreasereflection). If supplied, the posterior probability that the effect meets or exceeds this magnitude in the goal direction is reported asprob_meaningful_change.- rope
Numeric length-2. ROPE bounds on the link scale, expressed on the native coefficient scale. For
intervention_goal = "decrease"the bounds are reflected together with the draws, so an asymmetric ROPE stays attached to the same parameter region. If supplied, posterior probability inside the ROPE is reported asrope_prob.- intervention_goal
"increase"(default) or"decrease". For"decrease", every reported coefficient is sign-flipped so that a positive value denotes improvement (full reflection onto an improvement-oriented scale);pdis unchanged and the ROPE is reflected with the draws. Intercept and ordinal threshold terms (b_Intercept) are excluded from the table, so only treatment, trend, and moderator slopes are reported.- ci_level
Credible interval width (default 0.95).
Value
A data frame with columns case, term, mean, sd,
lower, upper, pd, prob_meaningful_change, rope_prob.
Examples
if (interactive()) {
dat <- simulate_scd_data()
fit <- brms::brm(outcome ~ phase + (1 + phase | case),
data = dat, refresh = 0)
summarize_per_case_effects(fit, threshold = 0.5)
}